WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:ZK54.2a.1 Sequence Name  ZK54.2a.1
Length (nt)  4356   Chromosome Location  X: 17467121-17474534
Chromosome . Primary Identifier  X Chromosome Location . Start  17467121
Chromosome Location . End  17474534 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK54.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006602 tps-1 ZK54.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK54.2a ZK54.2a 3996   X: 17467475-17467687

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK54.2a.1 17467121 17474534 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon266051   567   X: 17467121-17467687 Caenorhabditis elegans
Exon266053   204   X: 17468018-17468221 Caenorhabditis elegans
Exon266055   234   X: 17468274-17468507 Caenorhabditis elegans
Exon266057   289   X: 17468554-17468842 Caenorhabditis elegans
Exon266059   110   X: 17468897-17469006 Caenorhabditis elegans
Exon266061   189   X: 17469053-17469241 Caenorhabditis elegans
Exon266063   129   X: 17469354-17469482 Caenorhabditis elegans
Exon266065   681   X: 17469535-17470215 Caenorhabditis elegans
Exon266067   111   X: 17470262-17470372 Caenorhabditis elegans
Exon266069   222   X: 17470584-17470805 Caenorhabditis elegans
Exon266071   156   X: 17470852-17471007 Caenorhabditis elegans
Exon266073   102   X: 17471053-17471154 Caenorhabditis elegans
Exon266075   79   X: 17471205-17471283 Caenorhabditis elegans
Exon266077   128   X: 17471630-17471757 Caenorhabditis elegans
Exon266079   180   X: 17471805-17471984 Caenorhabditis elegans
Exon266081   147   X: 17472029-17472175 Caenorhabditis elegans
Exon266083   222   X: 17472347-17472568 Caenorhabditis elegans
Exon266085   93   X: 17473107-17473199 Caenorhabditis elegans
Exon266087   339   X: 17473253-17473591 Caenorhabditis elegans
Exon266090   75   X: 17473642-17473716 Caenorhabditis elegans
Exon266091   99   X: 17474436-17474534 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK54.2a.1 17467121 17474534 -1

1 Sequence

Length
4356

1 Sequence Ontology Term

Identifier Name Description
transcript