WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R09G11.2a.2 Sequence Name  R09G11.2a.2
Length (nt)  2464   Chromosome Location  X: 17514063-17528194
Chromosome . Primary Identifier  X Chromosome Location . Start  17514063
Chromosome Location . End  17528194 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R09G11.2a.2

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003600 nhr-1 R09G11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R09G11.2a R09G11.2a 1338   X: 17520017-17520206

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R09G11.2a.2 17514063 17528194 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon266106   109   X: 17514063-17514171 Caenorhabditis elegans
Exon266109   85   X: 17518445-17518529 Caenorhabditis elegans
Exon266112   191   X: 17520016-17520206 Caenorhabditis elegans
Exon266117   88   X: 17520823-17520910 Caenorhabditis elegans
Exon266124   80   X: 17522225-17522304 Caenorhabditis elegans
Exon266130   66   X: 17522416-17522481 Caenorhabditis elegans
Exon266136   119   X: 17523475-17523593 Caenorhabditis elegans
Exon266142   147   X: 17523824-17523970 Caenorhabditis elegans
Exon266148   135   X: 17524020-17524154 Caenorhabditis elegans
Exon266154   129   X: 17526305-17526433 Caenorhabditis elegans
Exon266159   127   X: 17526482-17526608 Caenorhabditis elegans
Exon266164   155   X: 17526957-17527111 Caenorhabditis elegans
Exon266168   1033   X: 17527162-17528194 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R09G11.2a.2 17514063 17528194 1

1 Sequence

Length
2464

1 Sequence Ontology Term

Identifier Name Description
transcript