WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R09G11.2a.3 Sequence Name  R09G11.2a.3
Length (nt)  2361   Chromosome Location  X: 17518439-17528194
Chromosome . Primary Identifier  X Chromosome Location . Start  17518439
Chromosome Location . End  17528194 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R09G11.2a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003600 nhr-1 R09G11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R09G11.2a R09G11.2a 1338   X: 17520017-17520206

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R09G11.2a.3 17518439 17528194 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon266107   91   X: 17518439-17518529 Caenorhabditis elegans
Exon266113   191   X: 17520016-17520206 Caenorhabditis elegans
Exon266118   88   X: 17520823-17520910 Caenorhabditis elegans
Exon266125   80   X: 17522225-17522304 Caenorhabditis elegans
Exon266131   66   X: 17522416-17522481 Caenorhabditis elegans
Exon266137   119   X: 17523475-17523593 Caenorhabditis elegans
Exon266143   147   X: 17523824-17523970 Caenorhabditis elegans
Exon266149   135   X: 17524020-17524154 Caenorhabditis elegans
Exon266155   129   X: 17526305-17526433 Caenorhabditis elegans
Exon266160   127   X: 17526482-17526608 Caenorhabditis elegans
Exon266165   155   X: 17526957-17527111 Caenorhabditis elegans
Exon266169   1033   X: 17527162-17528194 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R09G11.2a.3 17518439 17528194 1

1 Sequence

Length
2361

1 Sequence Ontology Term

Identifier Name Description
transcript