WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:R09G11.2a.1 Sequence Name  R09G11.2a.1
Length (nt)  2554   Chromosome Location  X: 17519735-17528197
Chromosome . Primary Identifier  X Chromosome Location . Start  17519735
Chromosome Location . End  17528197 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R09G11.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003600 nhr-1 R09G11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R09G11.2a R09G11.2a 1338   X: 17520017-17520206

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R09G11.2a.1 17519735 17528197 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon266110   472   X: 17519735-17520206 Caenorhabditis elegans
Exon266116   88   X: 17520823-17520910 Caenorhabditis elegans
Exon266123   80   X: 17522225-17522304 Caenorhabditis elegans
Exon266129   66   X: 17522416-17522481 Caenorhabditis elegans
Exon266135   119   X: 17523475-17523593 Caenorhabditis elegans
Exon266141   147   X: 17523824-17523970 Caenorhabditis elegans
Exon266147   135   X: 17524020-17524154 Caenorhabditis elegans
Exon266153   129   X: 17526305-17526433 Caenorhabditis elegans
Exon266158   127   X: 17526482-17526608 Caenorhabditis elegans
Exon266163   155   X: 17526957-17527111 Caenorhabditis elegans
Exon266170   1036   X: 17527162-17528197 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R09G11.2a.1 17519735 17528197 1

1 Sequence

Length
2554

1 Sequence Ontology Term

Identifier Name Description
transcript