WormMine

WS295

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F31A3.5.1 Sequence Name  F31A3.5.1
Length (nt)  2665   Chromosome Location  X: 17554945-17563610
Chromosome . Primary Identifier  X Chromosome Location . Start  17554945
Chromosome Location . End  17563610 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F31A3.5.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00017939 F31A3.5 F31A3.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F31A3.5 F31A3.5 2064   X: 17555432-17555659

1 Chromosome

WormBase ID Organism Length (nt)
X Caenorhabditis elegans 17718942  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F31A3.5.1 17554945 17563610 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon266194   715   X: 17554945-17555659 Caenorhabditis elegans
Exon266195   271   X: 17556160-17556430 Caenorhabditis elegans
Exon266197   127   X: 17556816-17556942 Caenorhabditis elegans
Exon266199   319   X: 17556991-17557309 Caenorhabditis elegans
Exon266201   103   X: 17557788-17557890 Caenorhabditis elegans
Exon266203   173   X: 17558273-17558445 Caenorhabditis elegans
Exon266205   175   X: 17559067-17559241 Caenorhabditis elegans
Exon266207   152   X: 17559289-17559440 Caenorhabditis elegans
Exon266209   219   X: 17559848-17560066 Caenorhabditis elegans
Exon266211   154   X: 17560112-17560265 Caenorhabditis elegans
Exon266213   194   X: 17561284-17561477 Caenorhabditis elegans
Exon266215   63   X: 17563548-17563610 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F31A3.5.1 17554945 17563610 -1

1 Sequence

Length
2665

1 Sequence Ontology Term

Identifier Name Description
transcript