WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y53H1C.2a.1 Sequence Name  Y53H1C.2a.1
Length (nt)  5339   Chromosome Location  I: 11400143-11416427
Chromosome . Primary Identifier  I Chromosome Location . Start  11400143
Chromosome Location . End  11416427 Method  Coding_transcript
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y53H1C.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001215 ego-2 Y53H1C.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y53H1C.2a Y53H1C.2a 4479   I: 11400996-11401086

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y53H1C.2a.1 11400143 11416427 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon29736   944   I: 11400143-11401086 Caenorhabditis elegans
Exon29738   137   I: 11402262-11402398 Caenorhabditis elegans
Exon29740   173   I: 11402609-11402781 Caenorhabditis elegans
Exon29742   187   I: 11402834-11403020 Caenorhabditis elegans
Exon29744   1727   I: 11403476-11405202 Caenorhabditis elegans
Exon29746   309   I: 11406169-11406477 Caenorhabditis elegans
Exon29749   150   I: 11408164-11408313 Caenorhabditis elegans
Exon29751   728   I: 11409452-11410179 Caenorhabditis elegans
Exon29753   230   I: 11411339-11411568 Caenorhabditis elegans
Exon29755   156   I: 11412993-11413148 Caenorhabditis elegans
Exon29757   141   I: 11413609-11413749 Caenorhabditis elegans
Exon29759   142   I: 11414917-11415058 Caenorhabditis elegans
Exon29761   128   I: 11416002-11416129 Caenorhabditis elegans
Exon29763   75   I: 11416187-11416261 Caenorhabditis elegans
Exon29765   112   I: 11416316-11416427 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y53H1C.2a.1 11400143 11416427 -1

1 Sequence

Length
5339

1 Sequence Ontology Term

Identifier Name Description
transcript