WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00014483 Gene Name  R05D7.6
Sequence Name  ? R05D7.6 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0001268
Genetic Position  Length (nt)  ? 187
Quick Links:
 
Quick Links:
 

1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00014483

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:R05D7.6 R05D7.6 187   I: 12173725-12173911
 

Other

0 CDSs

3 RNAi Result

WormBase ID
WBRNAi00003829
WBRNAi00012925
WBRNAi00107982

8 Allele

Public Name
gk962706
gk963849
gk962859
gk964175
gk963095
gk964202
gk964201
gk940556

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00014483 12173725 12173911 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00014483 12173725 12173911 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
187

1 Sequence Ontology Term