WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y87G2A.17 Sequence Name  Y87G2A.17
Length (nt)  573   Chromosome Location  I: 13491767-13491882
Chromosome . Primary Identifier  I Chromosome Location . Start  13491767
Chromosome Location . End  13491882
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y87G2A.17

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE35142 SOEM-1 21.2 190 Caenorhabditis elegans
 

Other

1 RNAi

WormBase ID
WBRNAi00004836

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y87G2A.17 13491767 13491882 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013603 soem-1 Y87G2A.17 Caenorhabditis elegans

4 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y87G2A.17 13491767 13491882 -1
CDS:Y87G2A.17 13492587 13492773 -1
CDS:Y87G2A.17 13492983 13493098 -1
CDS:Y87G2A.17 13493145 13493298 -1

1 Sequence

Length
573

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y87G2A.17.2 Y87G2A.17.2 1020   I: 13491381-13500256
Transcript:Y87G2A.17.1 Y87G2A.17.1 972   I: 13491387-13493317