WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105E8A.25b.1 Sequence Name  Y105E8A.25b.1
Length (nt)  5188   Chromosome Location  I: 14567169-14616523
Chromosome . Primary Identifier  I Chromosome Location . Start  14567169
Chromosome Location . End  14616523 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105E8A.25b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013682 rhgf-3 Y105E8A.25 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105E8A.25b Y105E8A.25b 4860   I: 14567497-14567497

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.25b.1 14567169 14616523 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon35992   329   I: 14567169-14567497 Caenorhabditis elegans
Exon35999   24   I: 14569917-14569940 Caenorhabditis elegans
Exon36001   312   I: 14570053-14570364 Caenorhabditis elegans
Exon36013   349   I: 14571439-14571787 Caenorhabditis elegans
Exon36015   222   I: 14572719-14572940 Caenorhabditis elegans
Exon36022   192   I: 14575108-14575299 Caenorhabditis elegans
Exon36029   499   I: 14576119-14576617 Caenorhabditis elegans
Exon36036   689   I: 14577880-14578568 Caenorhabditis elegans
Exon36044   119   I: 14579082-14579200 Caenorhabditis elegans
Exon36052   112   I: 14579463-14579574 Caenorhabditis elegans
Exon36060   91   I: 14585522-14585612 Caenorhabditis elegans
Exon36065   105   I: 14586781-14586885 Caenorhabditis elegans
Exon36070   73   I: 14587067-14587139 Caenorhabditis elegans
Exon36074   438   I: 14589198-14589635 Caenorhabditis elegans
Exon36078   107   I: 14590706-14590812 Caenorhabditis elegans
Exon36084   158   I: 14592095-14592252 Caenorhabditis elegans
Exon36089   244   I: 14593328-14593571 Caenorhabditis elegans
Exon36092   353   I: 14595998-14596350 Caenorhabditis elegans
Exon36095   97   I: 14600191-14600287 Caenorhabditis elegans
Exon36098   141   I: 14602064-14602204 Caenorhabditis elegans
Exon36101   71   I: 14602262-14602332 Caenorhabditis elegans
Exon36104   213   I: 14602593-14602805 Caenorhabditis elegans
Exon36107   149   I: 14603990-14604138 Caenorhabditis elegans
Exon36110   101   I: 14616423-14616523 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.25b.1 14567169 14616523 -1

1 Sequence

Length
5188

1 Sequence Ontology Term

Identifier Name Description
transcript