WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y105E8A.25c.1 Sequence Name  Y105E8A.25c.1
Length (nt)  3243   Chromosome Location  I: 14567368-14593421
Chromosome . Primary Identifier  I Chromosome Location . Start  14567368
Chromosome Location . End  14593421 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y105E8A.25c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013682 rhgf-3 Y105E8A.25 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y105E8A.25c Y105E8A.25c 3243   I: 14567368-14567497

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.25c.1 14567368 14593421 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

15 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon35997   130   I: 14567368-14567497 Caenorhabditis elegans
Exon36002   312   I: 14570053-14570364 Caenorhabditis elegans
Exon36008   340   I: 14571439-14571778 Caenorhabditis elegans
Exon36016   222   I: 14572719-14572940 Caenorhabditis elegans
Exon36023   192   I: 14575108-14575299 Caenorhabditis elegans
Exon36030   499   I: 14576119-14576617 Caenorhabditis elegans
Exon36037   689   I: 14577880-14578568 Caenorhabditis elegans
Exon36045   119   I: 14579082-14579200 Caenorhabditis elegans
Exon36053   112   I: 14579463-14579574 Caenorhabditis elegans
Exon36061   91   I: 14585522-14585612 Caenorhabditis elegans
Exon36066   105   I: 14586781-14586885 Caenorhabditis elegans
Exon36071   73   I: 14587067-14587139 Caenorhabditis elegans
Exon36079   107   I: 14590706-14590812 Caenorhabditis elegans
Exon36085   158   I: 14592095-14592252 Caenorhabditis elegans
Exon36087   94   I: 14593328-14593421 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y105E8A.25c.1 14567368 14593421 -1

1 Sequence

Length
3243

1 Sequence Ontology Term

Identifier Name Description
transcript