WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54E5B.1b.4 Sequence Name  Y54E5B.1b.4
Length (nt)  2581   Chromosome Location  I: 14807480-14815718
Chromosome . Primary Identifier  I Chromosome Location . Start  14807480
Chromosome Location . End  14815718 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54E5B.1b.4

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004889 smp-1 Y54E5B.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54E5B.1b Y54E5B.1b 795   I: 14807480-14807585

1 Chromosome

WormBase ID Organism Length (nt)
I Caenorhabditis elegans 15072434  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54E5B.1b.4 14807480 14815718 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon36626   106   I: 14807480-14807585 Caenorhabditis elegans
Exon36631   103   I: 14810443-14810545 Caenorhabditis elegans
Exon36637   46   I: 14810821-14810866 Caenorhabditis elegans
Exon36643   326   I: 14810909-14811234 Caenorhabditis elegans
Exon36649   80   I: 14811399-14811478 Caenorhabditis elegans
Exon36655   98   I: 14812262-14812359 Caenorhabditis elegans
Exon36660   149   I: 14812411-14812559 Caenorhabditis elegans
Exon36667   155   I: 14812729-14812883 Caenorhabditis elegans
Exon36672   509   I: 14813321-14813829 Caenorhabditis elegans
Exon36675   47   I: 14814386-14814432 Caenorhabditis elegans
Exon36679   113   I: 14814479-14814591 Caenorhabditis elegans
Exon36684   119   I: 14814642-14814760 Caenorhabditis elegans
Exon36690   168   I: 14814815-14814982 Caenorhabditis elegans
Exon36691   562   I: 14815157-14815718 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54E5B.1b.4 14807480 14815718 1

1 Sequence

Length
2581

1 Sequence Ontology Term

Identifier Name Description
transcript