WormMine: Gene WBGene00271651

• WormBase Gene ID: WBGene00271651
• Gene Name: F19B10.14
• Sequence Name: F19B10.14
• Organism: Caenorhabditis elegans
• Automated Description: Enriched in dorsal uterine cell; germ line; rectal valve cell; and virL based on single-cell RNA-seq studies. Is affected by several genes including stt-3; hsf-1; and spr-5 based on RNA-seq studies. Is affected by bortezomib; Tamoxifen; and Cadmium Chloride based on RNA-seq studies.
• Biotype: SO:0001263
• Genetic Position: :±
• Length (nt): 303

1 Organism

• Name: Caenorhabditis elegans
• Taxon Id: 6239

1 Synonyms

• Value: WBGene00271651

Genomics

1 Transcripts

WormMine ID	Sequence Name	Length (nt)	Chromosome Location
Transcript:F19B10.14	F19B10.14	303	II: 3685540-3685842

Other

0 CDSs

0 RNAi Result

37 Allele

• gk963801
• gk963053
• WBVar02121133
• gk964038
• WBVar02123020
• WBVar02123884
• WBVar02123572
• tm10714
• WBVar02120458
• WBVar02122782
• WBVar00091193
• WBVar02121846
• WBVar02120788
• WBVar02123360
• WBVar02124458
• WBVar02120618
• WBVar02124940
• WBVar02121372
• WBVar02120934
• WBVar00091072
• WBVar02121724
• WBVar01504639
• WBVar01504641
• WBVar01504640
• WBVar00102898
• WBVar00220814
• WBVar00220813
• WBVar00220812
• WBVar00220811
• WBVar01368578

1 Chromosome

• WormBase ID: II
• Organism: Caenorhabditis elegans
• Length (nt): 15279421

1 Chromosome Location

• Feature . Primary Identifier: WBGene00271651
• Start: 3685540
• End: 3685842
• Strand: 1

2 Data Sets

• WormBaseAcedbConverter
• C. elegans genomic annotations (GFF3 Gene)

1 Downstream Intergenic Region

• WormBase ID: intergenic_region_chrII_3685843..3685951
• Length (nt): 109
• Chromosome Location: II: 3685843-3685951
• Organism: Caenorhabditis elegans

27 Expression Clusters

Regulated By Treatment	Description	Algorithm	Primary Identifier
Bacteria: E.faecalis strain OG1RF	Transcripts that showed significantly increased expression after infection by E. faecalis OG1RF.	Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05.	WBPaper00059754:E.faecalis_OG1RF_upregulated
	Transcripts that showed significantly increased expression in day 1 adult hermaphrodite comparing to in L4 larva glp-1(e2141) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-1-adult_vs_L4_upregulated_glp-1(e2141)
	Transcripts that showed significantly increased expression in day 3 adult hermaphrodite comparing to in L4 larva fem-3(q20) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-3-adult_vs_L4_upregulated_fem-3(q20)
	Transcripts that showed significantly increased expression after 24 hours of induction of human beta Amyloid at young adult stage	A 2-fold change in expression level and a false discovery rate analog of p < 0.05.	WBPaper00064130:Beta-Amyloid_24h_upregulated_mRNA
	Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage.	DESeq2, fold change > 2, FDR < 0.05.	WBPaper00066594:ilc-17.1(syb5296)_upregulated
Heat shock: 35C for 1 hour.	Transcripts that showed significantly increased expression 4 hours after 1-day post L4 adult hermaphrodite N2 animals were exposed to 35C for 1 hour.	The DESeq2 (GalaxyVersion 2.11.40.6 + galaxy1) was used to determine differentiallyexpressed features from count tables of differential transcript abundances. log2FC > 1, FDR < 0.01.	WBPaper00065749:Heat-Shock-With-Recovery_upregulated_N2
	Transcripts that showed significantly increased expression in day 3 adult hermaphrodite comparing to in L4 larva daf-16(mu86);glp-1(e2141) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-3-adult_vs_L4_upregulated_daf-16(mu86);glp-1(e2141)
	Transcripts that showed significantly increased expression in day 3 adult hermaphrodite comparing to in L4 larva glp-1(e2141) animals.	Fold change > 2, FDR < 0.05	WBPaper00064088:Day-3-adult_vs_L4_upregulated_glp-1(e2141)
	Single-cell RNA-Seq cell group 30_0 expressed in valve.	scVI 0.6.0	WBPaper00065841:30_0
	Transcripts that showed significantly increased expression in animals exposed to Leptomycin B for 3 hours at 2C.	p < 0.01, logFC > 1 or p < 0.01, logFC < -1.	WBPaper00066610:Leptomycin-B_upregulated_2C_3h
	Transcripts that showed significantly increased expression in lin-52(n771) comparing to in N2 animals at L1 larva stage.	DESeq2	WBPaper00065149:lin-52(n771)_upregulated
	Transcripts that showed significantly increased expression in pals-22(jy3) comparing to in N2 animals.	limma-voom, fold change > 2, FDR < 0.05	WBPaper00064532:pals-22(jy3)_upregulated
	Transcripts that showed significantly increased expression in pals-25(jy111) comparing to in N2 animals.	limma-voom, fold change > 2, FDR < 0.05	WBPaper00064532:pals-25(jy111)_upregulated
	transcripts that showed significantly increased expression after N2 animals were exposed to 20 uM bortezomib for 4 hours.	Differential expression analyses were performed using limma-voom in Galaxy. Fold change > 2, FDR < 0.05.	WBPaper00062345:bortezomib_4h_upregulated_N2
	Transcripts that showed significantly increased expression in N2 animals exposed to 30 uM CdCl2 for five days starting from L4.	edgeR, fold change > 2, p < 0.05.	WBPaper00066204:CdCl2_upregulated_mRNA
	Transcripts that showed significantly decreased expression in animals exposed to 400uM tamoxifen from L1 to L4 larva stage.	DEseq2, fold change > 2	WBPaper00064505:tamoxifen_downregulated
	transcripts that showed significantly increased expression after zip-1(jy13) animals were exposed to 20 uM bortezomib for 4 hours.	Differential expression analyses were performed using limma-voom in Galaxy. Fold change > 2, FDR < 0.05.	WBPaper00062345:bortezomib_4h_upregulated_zip-1(jy13)
	Transcripts that showed significantly decreased expression in L1 neural cells comparing to in adult neural cells.	DESeq2 (v1.18.1) fold change > 2, P-adj<0.05, using BenjaminiHochberg correction.	WBPaper00060811:L1_vs_adult_downregulated_neural
	Transcripts that showed significantly decreased expression in postdauer adults comparing to adult animals that bypassed the dauger stage.	DESeq 2, FDR < 0.05.	WBPaper00064494:postdauer_downregulated_WholeAnimal
	Transcripts that showed significantly increased expression in hsf-1(RNAi) comparing to in wild type animals injected with vector.	Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed.	WBPaper00066232:hsf-1(RNAi)_upregulated_WT
	Transcripts that showed significantly increased expression in spr-5(by101);met-2(n4256) L1 animals comparing to in N2 control.	DeSeq2 (v.2.11.40.2), p < 0.05.	WBPaper00060886:spr-5(by101);met-2(n4256)_upregulated
	Transcripts that showed significantly increased expression in hsf-1(RNAi) comparing to in ash-2 animals injected with vector.	Differential mRNA expression using DESeq2. mRNAs with a FDR < 0.05 and fold change > 2 considered differentially expressed.	WBPaper00066232:hsf-1(RNAi)_upregulated_ash-2
Bacteria: P.aeruginosa strain PA14	Transcripts that showed significantly increased expression after infection by P. aeruginosa PA14.	Ballgown was used to calculate differential expression of genes using FPKM data and to generate tables with fold change and P values. Genes were shortlisted with a cutoff of 2-fold change and P values of less than 0.05.	WBPaper00059754:P.aeruginosa_PA14_upregulated
	Transcripts that showed signicantly increased expression in unc-25(e156) comparing to in N2 animals.	DESeq R package (1.18.0), fold change > 2, FDR < 0.05.	WBPaper00065734:unc-25(e156)_upregulated
	Single-cell RNA-Seq cell group 57_0 expressed in epithelium.	scVI 0.6.0	WBPaper00065841:57_0
	Single-cell RNA-Seq cell group 57_1 expressed in germline.	scVI 0.6.0	WBPaper00065841:57_1
	Transcripts with expression significantly increased by stt-3(RNAi).	DESeq2, v.1.22.2, fold change > 2, FDR < 0.05.	WBPaper00059373:stt-3(RNAi)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations

• Feature . Primary Identifier: WBGene00271651
• Start: 3685540
• End: 3685842
• Strand: 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

• Length: 303

1 Sequence Ontology Term