WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F53C3.6a.1 Sequence Name  F53C3.6a.1
Length (nt)  1897   Chromosome Location  II: 3898142-3900953
Chromosome . Primary Identifier  II Chromosome Location . Start  3898142
Chromosome Location . End  3900953 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F53C3.6a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00018750 F53C3.6 F53C3.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F53C3.6a F53C3.6a 753   II: 3898161-3898372

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F53C3.6a.1 3898142 3900953 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon46346   231   II: 3898142-3898372 Caenorhabditis elegans
Exon46348   129   II: 3898418-3898546 Caenorhabditis elegans
Exon46349   106   II: 3899015-3899120 Caenorhabditis elegans
Exon46351   110   II: 3899171-3899280 Caenorhabditis elegans
Exon46353   91   II: 3899324-3899414 Caenorhabditis elegans
Exon46356   509   II: 3899462-3899970 Caenorhabditis elegans
Exon46358   121   II: 3900015-3900135 Caenorhabditis elegans
Exon46360   106   II: 3900207-3900312 Caenorhabditis elegans
Exon46362   110   II: 3900361-3900470 Caenorhabditis elegans
Exon46364   88   II: 3900521-3900608 Caenorhabditis elegans
Exon46367   296   II: 3900658-3900953 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F53C3.6a.1 3898142 3900953 1

1 Sequence

Length
1897

1 Sequence Ontology Term

Identifier Name Description
transcript