WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16A11.5b.1 Sequence Name  C16A11.5b.1
Length (nt)  2272   Chromosome Location  II: 4223305-4226332
Chromosome . Primary Identifier  II Chromosome Location . Start  4223305
Chromosome Location . End  4226332 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16A11.5b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015818 C16A11.5 C16A11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16A11.5b C16A11.5b 1341   II: 4224653-4224898

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5b.1 4223305 4226332 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

12 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon47063   114   II: 4223305-4223418 Caenorhabditis elegans
Exon47081   109   II: 4223480-4223588 Caenorhabditis elegans
Exon47103   82   II: 4223652-4223733 Caenorhabditis elegans
Exon47111   105   II: 4223804-4223908 Caenorhabditis elegans
Exon47122   165   II: 4223967-4224131 Caenorhabditis elegans
Exon47143   249   II: 4224190-4224438 Caenorhabditis elegans
Exon47152   274   II: 4224625-4224898 Caenorhabditis elegans
Exon47163   324   II: 4224957-4225280 Caenorhabditis elegans
Exon47178   353   II: 4225327-4225679 Caenorhabditis elegans
Exon47193   105   II: 4225730-4225834 Caenorhabditis elegans
Exon47208   75   II: 4225890-4225964 Caenorhabditis elegans
Exon47233   317   II: 4226016-4226332 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5b.1 4223305 4226332 1

1 Sequence

Length
2272

1 Sequence Ontology Term

Identifier Name Description
transcript