WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C16A11.5a.3 Sequence Name  C16A11.5a.3
Length (nt)  1945   Chromosome Location  II: 4223309-4226330
Chromosome . Primary Identifier  II Chromosome Location . Start  4223309
Chromosome Location . End  4226330 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C16A11.5a.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00015818 C16A11.5 C16A11.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C16A11.5a C16A11.5a 1239   II: 4224295-4224438

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5a.3 4223309 4226330 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon47069   110   II: 4223309-4223418 Caenorhabditis elegans
Exon47080   109   II: 4223480-4223588 Caenorhabditis elegans
Exon47094   35   II: 4223652-4223686 Caenorhabditis elegans
Exon47110   105   II: 4223804-4223908 Caenorhabditis elegans
Exon47121   165   II: 4223967-4224131 Caenorhabditis elegans
Exon47142   249   II: 4224190-4224438 Caenorhabditis elegans
Exon47162   324   II: 4224957-4225280 Caenorhabditis elegans
Exon47177   353   II: 4225327-4225679 Caenorhabditis elegans
Exon47192   105   II: 4225730-4225834 Caenorhabditis elegans
Exon47207   75   II: 4225890-4225964 Caenorhabditis elegans
Exon47224   315   II: 4226016-4226330 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C16A11.5a.3 4223309 4226330 1

1 Sequence

Length
1945

1 Sequence Ontology Term

Identifier Name Description
transcript