WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00195847 Gene Name  Y52E8A.7
Sequence Name  ? Y52E8A.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by ogt-1 based on RNA-seq studies. Biotype  SO:0001263
Genetic Position  :± Length (nt)  ? 106
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00195847

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y52E8A.7 Y52E8A.7 106   II: 4312345-4312450
 

Other

0 CDSs

0 RNAi Result

15 Allele

Public Name
gk963801
gk963053
WBVar01576914
WBVar00550000
WBVar01959890
WBVar02122102
gk140537
gk963890
gk963891
WBVar02118890
gk337518
gk646610
WBVar02118181
gk822637
WBVar01238986

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier 		Start End Strand
WBGene00195847 4312345 4312450 -1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

1 Downstream Intergenic Region

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
intergenic_region_chrII_4312216..4312344   129 II: 4312216-4312344 Caenorhabditis elegans

1 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts that showed significantly increased expression in ogt-1(ok1474) neuronal cells isolated by FACs comparing to in FACs isolated neuronal cells from wild type. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066485:ogt-1(ok1474)_upregulated_neuron

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier 		Start End Strand
WBGene00195847 4312345 4312450 -1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
106

1 Sequence Ontology Term