WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y52E8A.6.1 Sequence Name  Y52E8A.6.1
Length (nt)  1407   Chromosome Location  II: 4316629-4319969
Chromosome . Primary Identifier  II Chromosome Location . Start  4316629
Chromosome Location . End  4319969 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y52E8A.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021798 Y52E8A.6 Y52E8A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y52E8A.6 Y52E8A.6 1311   II: 4316799-4316969

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y52E8A.6.1 4316629 4319969 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon47366   11   II: 4316629-4316639 Caenorhabditis elegans
Exon47367   256   II: 4316714-4316969 Caenorhabditis elegans
Exon47368   136   II: 4317221-4317356 Caenorhabditis elegans
Exon47369   271   II: 4317407-4317677 Caenorhabditis elegans
Exon47370   90   II: 4317751-4317840 Caenorhabditis elegans
Exon47373   124   II: 4319140-4319263 Caenorhabditis elegans
Exon47374   76   II: 4319312-4319387 Caenorhabditis elegans
Exon47375   97   II: 4319432-4319528 Caenorhabditis elegans
Exon47376   188   II: 4319575-4319762 Caenorhabditis elegans
Exon47377   158   II: 4319812-4319969 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y52E8A.6.1 4316629 4319969 -1

1 Sequence

Length
1407

1 Sequence Ontology Term

Identifier Name Description
transcript