WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C34F11.3c.1 Sequence Name  C34F11.3c.1
Length (nt)  2682   Chromosome Location  II: 5203322-5209799
Chromosome . Primary Identifier  II Chromosome Location . Start  5203322
Chromosome Location . End  5209799 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C34F11.3c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016415 ampd-1 C34F11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34F11.3c C34F11.3c 2544   II: 5203327-5203416

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C34F11.3c.1 5203322 5209799 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49527   95   II: 5203322-5203416 Caenorhabditis elegans
Exon49532   46   II: 5203463-5203508 Caenorhabditis elegans
Exon49541   53   II: 5204788-5204840 Caenorhabditis elegans
Exon49545   104   II: 5204888-5204991 Caenorhabditis elegans
Exon49548   189   II: 5205444-5205632 Caenorhabditis elegans
Exon49551   123   II: 5206578-5206700 Caenorhabditis elegans
Exon49555   230   II: 5206755-5206984 Caenorhabditis elegans
Exon49561   110   II: 5207667-5207776 Caenorhabditis elegans
Exon49565   119   II: 5207825-5207943 Caenorhabditis elegans
Exon49569   621   II: 5207990-5208610 Caenorhabditis elegans
Exon49573   178   II: 5208660-5208837 Caenorhabditis elegans
Exon49577   519   II: 5208929-5209447 Caenorhabditis elegans
Exon49582   295   II: 5209505-5209799 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C34F11.3c.1 5203322 5209799 1

1 Sequence

Length
2682

1 Sequence Ontology Term

Identifier Name Description
transcript