WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C34F11.3d.1 Sequence Name  C34F11.3d.1
Length (nt)  2847   Chromosome Location  II: 5203695-5209666
Chromosome . Primary Identifier  II Chromosome Location . Start  5203695
Chromosome Location . End  5209666 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C34F11.3d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016415 ampd-1 C34F11.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C34F11.3d C34F11.3d 2847   II: 5203695-5203727

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C34F11.3d.1 5203695 5209666 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49533   33   II: 5203695-5203727 Caenorhabditis elegans
Exon49534   108   II: 5203871-5203978 Caenorhabditis elegans
Exon49535   236   II: 5204026-5204261 Caenorhabditis elegans
Exon49536   132   II: 5204311-5204442 Caenorhabditis elegans
Exon49537   77   II: 5204487-5204563 Caenorhabditis elegans
Exon49542   53   II: 5204788-5204840 Caenorhabditis elegans
Exon49546   104   II: 5204888-5204991 Caenorhabditis elegans
Exon49552   123   II: 5206578-5206700 Caenorhabditis elegans
Exon49556   230   II: 5206755-5206984 Caenorhabditis elegans
Exon49558   42   II: 5207313-5207354 Caenorhabditis elegans
Exon49562   110   II: 5207667-5207776 Caenorhabditis elegans
Exon49566   119   II: 5207825-5207943 Caenorhabditis elegans
Exon49570   621   II: 5207990-5208610 Caenorhabditis elegans
Exon49574   178   II: 5208660-5208837 Caenorhabditis elegans
Exon49578   519   II: 5208929-5209447 Caenorhabditis elegans
Exon49580   162   II: 5209505-5209666 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C34F11.3d.1 5203695 5209666 1

1 Sequence

Length
2847

1 Sequence Ontology Term

Identifier Name Description
transcript