WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54A12.1.1 Sequence Name  C54A12.1.1
Length (nt)  3075   Chromosome Location  II: 5242442-5246837
Chromosome . Primary Identifier  II Chromosome Location . Start  5242442
Chromosome Location . End  5246837 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54A12.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004221 ptr-6 C54A12.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54A12.1 C54A12.1 2949   II: 5242566-5242840

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C54A12.1.1 5242442 5246837 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49724   399   II: 5242442-5242840 Caenorhabditis elegans
Exon49725   186   II: 5242890-5243075 Caenorhabditis elegans
Exon49726   213   II: 5243122-5243334 Caenorhabditis elegans
Exon49727   267   II: 5243478-5243744 Caenorhabditis elegans
Exon49728   296   II: 5243789-5244084 Caenorhabditis elegans
Exon49729   242   II: 5244247-5244488 Caenorhabditis elegans
Exon49730   332   II: 5244537-5244868 Caenorhabditis elegans
Exon49731   74   II: 5245090-5245163 Caenorhabditis elegans
Exon49732   465   II: 5245208-5245672 Caenorhabditis elegans
Exon49733   86   II: 5245823-5245908 Caenorhabditis elegans
Exon49734   282   II: 5245963-5246244 Caenorhabditis elegans
Exon49735   144   II: 5246558-5246701 Caenorhabditis elegans
Exon49736   89   II: 5246749-5246837 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C54A12.1.1 5242442 5246837 -1

1 Sequence

Length
3075

1 Sequence Ontology Term

Identifier Name Description
transcript