WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C54A12.2b.1 Sequence Name  C54A12.2b.1
Length (nt)  1290   Chromosome Location  II: 5250920-5255529
Chromosome . Primary Identifier  II Chromosome Location . Start  5250920
Chromosome Location . End  5255529 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C54A12.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016909 frpr-4 C54A12.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C54A12.2b C54A12.2b 1089   II: 5251121-5251241

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C54A12.2b.1 5250920 5255529 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon49739   322   II: 5250920-5251241 Caenorhabditis elegans
Exon49741   57   II: 5253264-5253320 Caenorhabditis elegans
Exon49743   125   II: 5253436-5253560 Caenorhabditis elegans
Exon49746   429   II: 5253606-5254034 Caenorhabditis elegans
Exon49749   142   II: 5254309-5254450 Caenorhabditis elegans
Exon49752   92   II: 5254701-5254792 Caenorhabditis elegans
Exon49755   123   II: 5255407-5255529 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C54A12.2b.1 5250920 5255529 -1

1 Sequence

Length
1290

1 Sequence Ontology Term

Identifier Name Description
transcript