WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:F07F6.6.1 Sequence Name  F07F6.6.1
Length (nt)  3157   Chromosome Location  II: 5440238-5446606
Chromosome . Primary Identifier  II Chromosome Location . Start  5440238
Chromosome Location . End  5446606 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F07F6.6.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003774 nmr-1 F07F6.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F07F6.6 F07F6.6 3078   II: 5440315-5440518

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F07F6.6.1 5440238 5446606 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon50188   281   II: 5440238-5440518 Caenorhabditis elegans
Exon50189   268   II: 5440801-5441068 Caenorhabditis elegans
Exon50190   92   II: 5441113-5441204 Caenorhabditis elegans
Exon50191   107   II: 5442981-5443087 Caenorhabditis elegans
Exon50192   196   II: 5443139-5443334 Caenorhabditis elegans
Exon50193   135   II: 5443380-5443514 Caenorhabditis elegans
Exon50194   149   II: 5443557-5443705 Caenorhabditis elegans
Exon50195   277   II: 5443760-5444036 Caenorhabditis elegans
Exon50196   153   II: 5444129-5444281 Caenorhabditis elegans
Exon50197   81   II: 5444342-5444422 Caenorhabditis elegans
Exon50198   105   II: 5444470-5444574 Caenorhabditis elegans
Exon50199   207   II: 5444621-5444827 Caenorhabditis elegans
Exon50200   406   II: 5445125-5445530 Caenorhabditis elegans
Exon50201   101   II: 5445572-5445672 Caenorhabditis elegans
Exon50202   87   II: 5445724-5445810 Caenorhabditis elegans
Exon50203   93   II: 5445858-5445950 Caenorhabditis elegans
Exon50204   202   II: 5445999-5446200 Caenorhabditis elegans
Exon50205   83   II: 5446260-5446342 Caenorhabditis elegans
Exon50206   134   II: 5446473-5446606 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F07F6.6.1 5440238 5446606 -1

1 Sequence

Length
3157

1 Sequence Ontology Term

Identifier Name Description
transcript