WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F56D1.4e.1 Sequence Name  F56D1.4e.1
Length (nt)  4714   Chromosome Location  II: 5466474-5473803
Chromosome . Primary Identifier  II Chromosome Location . Start  5466474
Chromosome Location . End  5473803 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F56D1.4e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000548 clr-1 F56D1.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F56D1.4e F56D1.4e 4296   II: 5466474-5466547

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F56D1.4e.1 5466474 5473803 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

19 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon50236   74   II: 5466474-5466547 Caenorhabditis elegans
Exon50239   104   II: 5466595-5466698 Caenorhabditis elegans
Exon50245   105   II: 5467003-5467107 Caenorhabditis elegans
Exon50250   107   II: 5467155-5467261 Caenorhabditis elegans
Exon50255   103   II: 5467613-5467715 Caenorhabditis elegans
Exon50260   333   II: 5467899-5468231 Caenorhabditis elegans
Exon50266   100   II: 5468884-5468983 Caenorhabditis elegans
Exon50268   66   II: 5469109-5469174 Caenorhabditis elegans
Exon50273   173   II: 5469389-5469561 Caenorhabditis elegans
Exon50278   302   II: 5469612-5469913 Caenorhabditis elegans
Exon50283   200   II: 5469960-5470159 Caenorhabditis elegans
Exon50288   384   II: 5470217-5470600 Caenorhabditis elegans
Exon50293   747   II: 5470835-5471581 Caenorhabditis elegans
Exon50299   96   II: 5471629-5471724 Caenorhabditis elegans
Exon50303   74   II: 5471778-5471851 Caenorhabditis elegans
Exon50308   139   II: 5471916-5472054 Caenorhabditis elegans
Exon50313   691   II: 5472100-5472790 Caenorhabditis elegans
Exon50318   302   II: 5472839-5473140 Caenorhabditis elegans
Exon50322   614   II: 5473190-5473803 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F56D1.4e.1 5466474 5473803 1

1 Sequence

Length
4714

1 Sequence Ontology Term

Identifier Name Description
transcript