WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C04A2.3n.1 Sequence Name  C04A2.3n.1
Length (nt)  2961   Chromosome Location  II: 6837930-6847312
Chromosome . Primary Identifier  II Chromosome Location . Start  6837930
Chromosome Location . End  6847312 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C04A2.3n.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001194 egl-27 C04A2.3 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C04A2.3n C04A2.3n 2961   II: 6837930-6837977

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C04A2.3n.1 6837930 6847312 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon54541   48   II: 6837930-6837977 Caenorhabditis elegans
Exon54555   65   II: 6838027-6838091 Caenorhabditis elegans
Exon54571   163   II: 6840193-6840355 Caenorhabditis elegans
Exon54588   180   II: 6840451-6840630 Caenorhabditis elegans
Exon54600   228   II: 6840683-6840910 Caenorhabditis elegans
Exon54629   229   II: 6841485-6841713 Caenorhabditis elegans
Exon54651   196   II: 6842410-6842605 Caenorhabditis elegans
Exon54675   1126   II: 6845362-6846487 Caenorhabditis elegans
Exon54701   504   II: 6846537-6847040 Caenorhabditis elegans
Exon54715   222   II: 6847091-6847312 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C04A2.3n.1 6837930 6847312 1

1 Sequence

Length
2961

1 Sequence Ontology Term

Identifier Name Description
transcript