WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C27H5.2d.1 Sequence Name  C27H5.2d.1
Length (nt)  1857   Chromosome Location  II: 7155581-7160009
Chromosome . Primary Identifier  II Chromosome Location . Start  7155581
Chromosome Location . End  7160009 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C27H5.2d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00016172 C27H5.2 C27H5.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C27H5.2d C27H5.2d 1395   II: 7155683-7155707

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C27H5.2d.1 7155581 7160009 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon56006   127   II: 7155581-7155707 Caenorhabditis elegans
Exon56011   93   II: 7157051-7157143 Caenorhabditis elegans
Exon56015   123   II: 7157867-7157989 Caenorhabditis elegans
Exon56019   126   II: 7158033-7158158 Caenorhabditis elegans
Exon56023   104   II: 7158251-7158354 Caenorhabditis elegans
Exon56027   276   II: 7158420-7158695 Caenorhabditis elegans
Exon56031   83   II: 7158742-7158824 Caenorhabditis elegans
Exon56035   103   II: 7158874-7158976 Caenorhabditis elegans
Exon56039   212   II: 7159024-7159235 Caenorhabditis elegans
Exon56043   109   II: 7159284-7159392 Caenorhabditis elegans
Exon56047   501   II: 7159509-7160009 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C27H5.2d.1 7155581 7160009 1

1 Sequence

Length
1857

1 Sequence Ontology Term

Identifier Name Description
transcript