WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK1290.4c.1 Sequence Name  ZK1290.4c.1
Length (nt)  2472   Chromosome Location  II: 7538280-7542538
Chromosome . Primary Identifier  II Chromosome Location . Start  7538280
Chromosome Location . End  7542538 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK1290.4c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00003592 nfi-1 ZK1290.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1290.4c ZK1290.4c 2472   II: 7538280-7538297

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK1290.4c.1 7538280 7542538 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon57258   18   II: 7538280-7538297 Caenorhabditis elegans
Exon57264   264   II: 7538700-7538963 Caenorhabditis elegans
Exon57270   81   II: 7539019-7539099 Caenorhabditis elegans
Exon57275   99   II: 7539155-7539253 Caenorhabditis elegans
Exon57280   132   II: 7539309-7539440 Caenorhabditis elegans
Exon57285   355   II: 7539497-7539851 Caenorhabditis elegans
Exon57291   259   II: 7540267-7540525 Caenorhabditis elegans
Exon57296   296   II: 7540575-7540870 Caenorhabditis elegans
Exon57301   138   II: 7540913-7541050 Caenorhabditis elegans
Exon57306   133   II: 7541315-7541447 Caenorhabditis elegans
Exon57311   287   II: 7541495-7541781 Caenorhabditis elegans
Exon57316   148   II: 7541831-7541978 Caenorhabditis elegans
Exon57321   100   II: 7542159-7542258 Caenorhabditis elegans
Exon57322   162   II: 7542377-7542538 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK1290.4c.1 7538280 7542538 1

1 Sequence

Length
2472

1 Sequence Ontology Term

Identifier Name Description
transcript