WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

Gene :

WormBase Gene ID  ? WBGene00045115 Gene Name  K02C4.7
Sequence Name  ? K02C4.7 Organism  Caenorhabditis elegans
Automated Description  Is affected by clk-1; ints-2; and ints-5 based on microarray and RNA-seq studies. Biotype  SO:0001267
Genetic Position  Length (nt)  ? 74
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
WBGene00045115

Genomics

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:K02C4.7 K02C4.7 74   II: 8091709-8091782
 

Other

0 CDSs

9 RNAi Result

WormBase ID
WBRNAi00001907
WBRNAi00049683
WBRNAi00016442
WBRNAi00109791
WBRNAi00109650
WBRNAi00109697
WBRNAi00103428
WBRNAi00092921
WBRNAi00109744

5 Allele

Public Name
gk963801
gk963053
gk962682
h13712
gk5831

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
WBGene00045115 8091709 8091782 1

2 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  

0 Downstream Intergenic Region

5 Expression Clusters

Regulated By Treatment Description Algorithm Primary Identifier
  Transcripts depleted in purified oocyte P bodies comparing to in whole oocytes. DESeq2, FDR < 0.05, fold change > 2. WBPaper00065975:P-body_vs_oocyte_depleted
  Transcripts that showed significantly increased expression in ilc-17.1(syb5296) comparing to in N2 animals at L4 larva stage. DESeq2, fold change > 2, FDR < 0.05. WBPaper00066594:ilc-17.1(syb5296)_upregulated
  Up-regulated genes (fold change > 1.5) in two CoQ-deficient clk-1 mutant strains (e2519, qm30) compared to wild types N2. Fold-changes of intensities were calculated from the arithmetic mean of gene expression values between experimental and corresponding control group. Fold change >= 1.5 was used as cut-off. WBPaper00045774:clk-1_upregulated
  Transcripts that showed significantly increased expression in ints-5(RNAi) comparing to in N2. DESeq2 and edgeR. WBPaper00056284:ints-5(RNAi)_upregulated
  Transcripts that showed significantly increased expression in ints-2(RNAi) comparing to in N2. DESeq2 and edgeR. WBPaper00056284:ints-2(RNAi)_upregulated

0 Expression Patterns

0 GO Annotation

0 Homologues

1 Locations


Feature . Primary Identifier
Start End Strand
WBGene00045115 8091709 8091782 1

0 Ontology Annotations

0 Regulates Expr Cluster

1 Sequence

Length
74

1 Sequence Ontology Term