WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C06C3.8a.1 Sequence Name  C06C3.8a.1
Length (nt)  1790   Chromosome Location  II: 9386538-9390900
Chromosome . Primary Identifier  II Chromosome Location . Start  9386538
Chromosome Location . End  9390900 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C06C3.8a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00007378 lido-17 C06C3.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C06C3.8a C06C3.8a 1740   II: 9386588-9386770

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C06C3.8a.1 9386538 9390900 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon63542   233   II: 9386538-9386770 Caenorhabditis elegans
Exon63546   130   II: 9386816-9386945 Caenorhabditis elegans
Exon63550   328   II: 9387049-9387376 Caenorhabditis elegans
Exon63555   305   II: 9387945-9388249 Caenorhabditis elegans
Exon63559   62   II: 9388296-9388357 Caenorhabditis elegans
Exon63562   99   II: 9388755-9388853 Caenorhabditis elegans
Exon63565   99   II: 9389095-9389193 Caenorhabditis elegans
Exon63568   126   II: 9389268-9389393 Caenorhabditis elegans
Exon63571   159   II: 9390005-9390163 Caenorhabditis elegans
Exon63574   249   II: 9390652-9390900 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C06C3.8a.1 9386538 9390900 -1

1 Sequence

Length
1790

1 Sequence Ontology Term

Identifier Name Description
transcript