WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:ZK1321.2a.1 Sequence Name  ZK1321.2a.1
Length (nt)  1764   Chromosome Location  II: 9758234-9768285
Chromosome . Primary Identifier  II Chromosome Location . Start  9758234
Chromosome Location . End  9768285 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
ZK1321.2a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00014261 shk-1 ZK1321.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:ZK1321.2a ZK1321.2a 1446   II: 9758254-9758378

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:ZK1321.2a.1 9758234 9768285 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

13 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon64419   145   II: 9758234-9758378 Caenorhabditis elegans
Exon64426   120   II: 9765426-9765545 Caenorhabditis elegans
Exon64432   84   II: 9765687-9765770 Caenorhabditis elegans
Exon64438   93   II: 9765815-9765907 Caenorhabditis elegans
Exon64446   100   II: 9766352-9766451 Caenorhabditis elegans
Exon64452   173   II: 9766607-9766779 Caenorhabditis elegans
Exon64458   158   II: 9766830-9766987 Caenorhabditis elegans
Exon64464   109   II: 9767032-9767140 Caenorhabditis elegans
Exon64470   93   II: 9767187-9767279 Caenorhabditis elegans
Exon64476   181   II: 9767328-9767508 Caenorhabditis elegans
Exon64482   20   II: 9767594-9767613 Caenorhabditis elegans
Exon64488   100   II: 9767724-9767823 Caenorhabditis elegans
Exon64499   388   II: 9767898-9768285 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:ZK1321.2a.1 9758234 9768285 1

1 Sequence

Length
1764

1 Sequence Ontology Term

Identifier Name Description
transcript