WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F40F8.5g.1 Sequence Name  F40F8.5g.1
Length (nt)  1215   Chromosome Location  II: 11133025-11134927
Chromosome . Primary Identifier  II Chromosome Location . Start  11133025
Chromosome Location . End  11134927 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F40F8.5g.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00009578 F40F8.5 F40F8.5 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F40F8.5g F40F8.5g 1215   II: 11133025-11133151

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F40F8.5g.1 11133025 11134927 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

8 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68175   127   II: 11133025-11133151 Caenorhabditis elegans
Exon68185   103   II: 11133203-11133305 Caenorhabditis elegans
Exon68195   123   II: 11133353-11133475 Caenorhabditis elegans
Exon68207   135   II: 11133703-11133837 Caenorhabditis elegans
Exon68212   132   II: 11133981-11134112 Caenorhabditis elegans
Exon68217   66   II: 11134224-11134289 Caenorhabditis elegans
Exon68226   258   II: 11134337-11134594 Caenorhabditis elegans
Exon68235   271   II: 11134657-11134927 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F40F8.5g.1 11133025 11134927 -1

1 Sequence

Length
1215

1 Sequence Ontology Term

Identifier Name Description
transcript