WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06D8.1e.1 Sequence Name  T06D8.1e.1
Length (nt)  10155   Chromosome Location  II: 11203221-11220238
Chromosome . Primary Identifier  II Chromosome Location . Start  11203221
Chromosome Location . End  11220238 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06D8.1e.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011522 srap-1 T06D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06D8.1e T06D8.1e 9999   II: 11203822-11203948

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1e.1 11203221 11220238 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68357   106   II: 11203221-11203326 Caenorhabditis elegans
Exon68360   177   II: 11203772-11203948 Caenorhabditis elegans
Exon68377   201   II: 11206666-11206866 Caenorhabditis elegans
Exon68389   90   II: 11207002-11207091 Caenorhabditis elegans
Exon68401   123   II: 11207472-11207594 Caenorhabditis elegans
Exon68413   72   II: 11207650-11207721 Caenorhabditis elegans
Exon68421   87   II: 11208446-11208532 Caenorhabditis elegans
Exon68453   237   II: 11209127-11209363 Caenorhabditis elegans
Exon68465   119   II: 11209462-11209580 Caenorhabditis elegans
Exon68477   142   II: 11209647-11209788 Caenorhabditis elegans
Exon68489   525   II: 11209842-11210366 Caenorhabditis elegans
Exon68501   489   II: 11210415-11210903 Caenorhabditis elegans
Exon68517   1062   II: 11210951-11212012 Caenorhabditis elegans
Exon68525   5741   II: 11212146-11217886 Caenorhabditis elegans
Exon68537   123   II: 11217935-11218057 Caenorhabditis elegans
Exon68549   114   II: 11218100-11218213 Caenorhabditis elegans
Exon68561   103   II: 11218265-11218367 Caenorhabditis elegans
Exon68585   84   II: 11219458-11219541 Caenorhabditis elegans
Exon68597   131   II: 11219589-11219719 Caenorhabditis elegans
Exon68609   163   II: 11219762-11219924 Caenorhabditis elegans
Exon68619   266   II: 11219973-11220238 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1e.1 11203221 11220238 1

1 Sequence

Length
10155

1 Sequence Ontology Term

Identifier Name Description
transcript