WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06D8.1d.1 Sequence Name  T06D8.1d.1
Length (nt)  10368   Chromosome Location  II: 11203822-11220238
Chromosome . Primary Identifier  II Chromosome Location . Start  11203822
Chromosome Location . End  11220238 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06D8.1d.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011522 srap-1 T06D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06D8.1d T06D8.1d 10368   II: 11203822-11203948

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1d.1 11203822 11220238 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68363   127   II: 11203822-11203948 Caenorhabditis elegans
Exon68376   201   II: 11206666-11206866 Caenorhabditis elegans
Exon68388   90   II: 11207002-11207091 Caenorhabditis elegans
Exon68400   123   II: 11207472-11207594 Caenorhabditis elegans
Exon68412   72   II: 11207650-11207721 Caenorhabditis elegans
Exon68432   102   II: 11208446-11208547 Caenorhabditis elegans
Exon68436   79   II: 11208730-11208808 Caenorhabditis elegans
Exon68444   173   II: 11208872-11209044 Caenorhabditis elegans
Exon68452   237   II: 11209127-11209363 Caenorhabditis elegans
Exon68464   119   II: 11209462-11209580 Caenorhabditis elegans
Exon68476   142   II: 11209647-11209788 Caenorhabditis elegans
Exon68488   525   II: 11209842-11210366 Caenorhabditis elegans
Exon68500   489   II: 11210415-11210903 Caenorhabditis elegans
Exon68510   831   II: 11210951-11211781 Caenorhabditis elegans
Exon68524   5741   II: 11212146-11217886 Caenorhabditis elegans
Exon68536   123   II: 11217935-11218057 Caenorhabditis elegans
Exon68548   114   II: 11218100-11218213 Caenorhabditis elegans
Exon68560   103   II: 11218265-11218367 Caenorhabditis elegans
Exon68570   45   II: 11218450-11218494 Caenorhabditis elegans
Exon68576   288   II: 11218627-11218914 Caenorhabditis elegans
Exon68584   84   II: 11219458-11219541 Caenorhabditis elegans
Exon68596   131   II: 11219589-11219719 Caenorhabditis elegans
Exon68608   163   II: 11219762-11219924 Caenorhabditis elegans
Exon68618   266   II: 11219973-11220238 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1d.1 11203822 11220238 1

1 Sequence

Length
10368

1 Sequence Ontology Term

Identifier Name Description
transcript