WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:T06D8.1l.1 Sequence Name  T06D8.1l.1
Length (nt)  10353   Chromosome Location  II: 11203822-11220238
Chromosome . Primary Identifier  II Chromosome Location . Start  11203822
Chromosome Location . End  11220238 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
T06D8.1l.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011522 srap-1 T06D8.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:T06D8.1l T06D8.1l 10353   II: 11203822-11203948

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1l.1 11203822 11220238 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

24 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon68369   127   II: 11203822-11203948 Caenorhabditis elegans
Exon68384   201   II: 11206666-11206866 Caenorhabditis elegans
Exon68396   90   II: 11207002-11207091 Caenorhabditis elegans
Exon68408   123   II: 11207472-11207594 Caenorhabditis elegans
Exon68420   72   II: 11207650-11207721 Caenorhabditis elegans
Exon68428   87   II: 11208446-11208532 Caenorhabditis elegans
Exon68440   79   II: 11208730-11208808 Caenorhabditis elegans
Exon68448   173   II: 11208872-11209044 Caenorhabditis elegans
Exon68460   237   II: 11209127-11209363 Caenorhabditis elegans
Exon68472   119   II: 11209462-11209580 Caenorhabditis elegans
Exon68484   142   II: 11209647-11209788 Caenorhabditis elegans
Exon68496   525   II: 11209842-11210366 Caenorhabditis elegans
Exon68508   489   II: 11210415-11210903 Caenorhabditis elegans
Exon68514   831   II: 11210951-11211781 Caenorhabditis elegans
Exon68532   5741   II: 11212146-11217886 Caenorhabditis elegans
Exon68544   123   II: 11217935-11218057 Caenorhabditis elegans
Exon68556   114   II: 11218100-11218213 Caenorhabditis elegans
Exon68568   103   II: 11218265-11218367 Caenorhabditis elegans
Exon68574   45   II: 11218450-11218494 Caenorhabditis elegans
Exon68580   288   II: 11218627-11218914 Caenorhabditis elegans
Exon68592   84   II: 11219458-11219541 Caenorhabditis elegans
Exon68604   131   II: 11219589-11219719 Caenorhabditis elegans
Exon68616   163   II: 11219762-11219924 Caenorhabditis elegans
Exon68626   266   II: 11219973-11220238 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:T06D8.1l.1 11203822 11220238 1

1 Sequence

Length
10353

1 Sequence Ontology Term

Identifier Name Description
transcript