WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y57A10A.18c.1 Sequence Name  Y57A10A.18c.1
Length (nt)  4987   Chromosome Location  II: 12209159-12221633
Chromosome . Primary Identifier  II Chromosome Location . Start  12209159
Chromosome Location . End  12221633 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y57A10A.18c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004167 pqn-87 Y57A10A.18 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y57A10A.18c Y57A10A.18c 4458   II: 12209688-12209830

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y57A10A.18c.1 12209159 12221633 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon71136   672   II: 12209159-12209830 Caenorhabditis elegans
Exon71142   370   II: 12210813-12211182 Caenorhabditis elegans
Exon71146   589   II: 12211790-12212378 Caenorhabditis elegans
Exon71153   1565   II: 12213392-12214956 Caenorhabditis elegans
Exon71159   120   II: 12215656-12215775 Caenorhabditis elegans
Exon71165   302   II: 12215890-12216191 Caenorhabditis elegans
Exon71170   50   II: 12217143-12217192 Caenorhabditis elegans
Exon71176   470   II: 12217253-12217722 Caenorhabditis elegans
Exon71182   139   II: 12218710-12218848 Caenorhabditis elegans
Exon71188   275   II: 12219391-12219665 Caenorhabditis elegans
Exon71194   186   II: 12219858-12220043 Caenorhabditis elegans
Exon71200   95   II: 12220295-12220389 Caenorhabditis elegans
Exon71206   113   II: 12220530-12220642 Caenorhabditis elegans
Exon71209   41   II: 12221593-12221633 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y57A10A.18c.1 12209159 12221633 -1

1 Sequence

Length
4987

1 Sequence Ontology Term

Identifier Name Description
transcript