WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y46G5A.1a.1 Sequence Name  Y46G5A.1a.1
Length (nt)  3601   Chromosome Location  II: 12694412-12725483
Chromosome . Primary Identifier  II Chromosome Location . Start  12694412
Chromosome Location . End  12725483 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y46G5A.1a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012894 tbc-17 Y46G5A.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y46G5A.1a Y46G5A.1a 3222   II: 12694453-12694538

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.1a.1 12694412 12725483 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

16 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon72041   127   II: 12694412-12694538 Caenorhabditis elegans
Exon72044   181   II: 12694765-12694945 Caenorhabditis elegans
Exon72047   320   II: 12696129-12696448 Caenorhabditis elegans
Exon72050   284   II: 12697088-12697371 Caenorhabditis elegans
Exon72053   289   II: 12698776-12699064 Caenorhabditis elegans
Exon72056   181   II: 12700617-12700797 Caenorhabditis elegans
Exon72059   70   II: 12701656-12701725 Caenorhabditis elegans
Exon72064   172   II: 12716760-12716931 Caenorhabditis elegans
Exon72067   351   II: 12716992-12717342 Caenorhabditis elegans
Exon72070   428   II: 12717825-12718252 Caenorhabditis elegans
Exon72073   125   II: 12718769-12718893 Caenorhabditis elegans
Exon72076   148   II: 12719964-12720111 Caenorhabditis elegans
Exon72079   167   II: 12721100-12721266 Caenorhabditis elegans
Exon72083   167   II: 12721816-12721982 Caenorhabditis elegans
Exon72085   140   II: 12723583-12723722 Caenorhabditis elegans
Exon72089   451   II: 12725033-12725483 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y46G5A.1a.1 12694412 12725483 1

1 Sequence

Length
3601

1 Sequence Ontology Term

Identifier Name Description
transcript