WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y46G5A.17 Sequence Name  Y46G5A.17
Length (nt)  2340   Chromosome Location  II: 12788596-12788688
Chromosome . Primary Identifier  II Chromosome Location . Start  12788596
Chromosome Location . End  12788688
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y46G5A.17

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE36414 CPT-1 89.3 779 Caenorhabditis elegans
 

Other

2 RNAi

WormBase ID
WBRNAi00000348
WBRNAi00056674

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y46G5A.17 12788596 12788688 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00012907 cpt-1 Y46G5A.17 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y46G5A.17 12788596 12788688 -1
CDS:Y46G5A.17 12789371 12789877 -1
CDS:Y46G5A.17 12790864 12791542 -1
CDS:Y46G5A.17 12793634 12794136 -1
CDS:Y46G5A.17 12795184 12795451 -1
CDS:Y46G5A.17 12795997 12796246 -1
CDS:Y46G5A.17 12796301 12796340 -1

1 Sequence

Length
2340

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y46G5A.17.1 Y46G5A.17.1 2804   II: 12788244-12796452
Transcript:Y46G5A.17.2 Y46G5A.17.2 2796   II: 12788252-12796452