WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:F54F11.2b.1 Sequence Name  F54F11.2b.1
Length (nt)  4383   Chromosome Location  II: 13509192-13516369
Chromosome . Primary Identifier  II Chromosome Location . Start  13509192
Chromosome Location . End  13516369 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F54F11.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010070 nep-17 F54F11.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F54F11.2b F54F11.2b 4383   II: 13509192-13509272

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F54F11.2b.1 13509192 13516369 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon73409   81   II: 13509192-13509272 Caenorhabditis elegans
Exon73411   389   II: 13509479-13509867 Caenorhabditis elegans
Exon73413   225   II: 13509918-13510142 Caenorhabditis elegans
Exon73415   235   II: 13510386-13510620 Caenorhabditis elegans
Exon73417   725   II: 13510677-13511401 Caenorhabditis elegans
Exon73421   476   II: 13511761-13512236 Caenorhabditis elegans
Exon73423   113   II: 13512284-13512396 Caenorhabditis elegans
Exon73425   1273   II: 13513260-13514532 Caenorhabditis elegans
Exon73427   543   II: 13514980-13515522 Caenorhabditis elegans
Exon73429   224   II: 13516000-13516223 Caenorhabditis elegans
Exon73430   99   II: 13516271-13516369 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F54F11.2b.1 13509192 13516369 1

1 Sequence

Length
4383

1 Sequence Ontology Term

Identifier Name Description
transcript