WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y51H1A.2b.1 Sequence Name  Y51H1A.2b.1
Length (nt)  2838   Chromosome Location  II: 13855982-13871901
Chromosome . Primary Identifier  II Chromosome Location . Start  13855982
Chromosome Location . End  13871901 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y51H1A.2b.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00013093 cup-14 Y51H1A.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y51H1A.2b Y51H1A.2b 2838   II: 13855982-13856125

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y51H1A.2b.1 13855982 13871901 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon73845   144   II: 13855982-13856125 Caenorhabditis elegans
Exon73847   526   II: 13856828-13857353 Caenorhabditis elegans
Exon73853   386   II: 13858281-13858666 Caenorhabditis elegans
Exon73857   78   II: 13858721-13858798 Caenorhabditis elegans
Exon73863   131   II: 13862720-13862850 Caenorhabditis elegans
Exon73865   361   II: 13863730-13864090 Caenorhabditis elegans
Exon73867   440   II: 13865945-13866384 Caenorhabditis elegans
Exon73869   350   II: 13868082-13868431 Caenorhabditis elegans
Exon73871   176   II: 13869849-13870024 Caenorhabditis elegans
Exon73873   106   II: 13871299-13871404 Caenorhabditis elegans
Exon73874   140   II: 13871762-13871901 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y51H1A.2b.1 13855982 13871901 -1

1 Sequence

Length
2838

1 Sequence Ontology Term

Identifier Name Description
transcript