WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:Y48B6A.3 Sequence Name  Y48B6A.3
Length (nt)  2928   Chromosome Location  II: 14155787-14156074
Chromosome . Primary Identifier  II Chromosome Location . Start  14155787
Chromosome Location . End  14156074
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y48B6A.3

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE42702 XRN-2 110.1 975 Caenorhabditis elegans
 

Other

36 RNAi

WormBase ID
WBRNAi00009354
WBRNAi00056881
WBRNAi00066824
WBRNAi00099833
WBRNAi00100501
WBRNAi00069460
WBRNAi00037232
WBRNAi00094029
WBRNAi00094230
WBRNAi00093855
WBRNAi00100875
WBRNAi00099227
WBRNAi00099631
WBRNAi00099429
WBRNAi00093852
WBRNAi00093854
WBRNAi00026753
WBRNAi00111881
WBRNAi00100127
WBRNAi00112359
WBRNAi00061114
WBRNAi00112043
WBRNAi00100314
WBRNAi00061113
WBRNAi00061115
WBRNAi00102726
WBRNAi00086055
WBRNAi00086058
WBRNAi00086060
WBRNAi00086062

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:Y48B6A.3 14155787 14156074 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006964 xrn-2 Y48B6A.3 Caenorhabditis elegans

7 Locations


Feature . Primary Identifier
Start End Strand
CDS:Y48B6A.3 14155787 14156074 1
CDS:Y48B6A.3 14156405 14156695 1
CDS:Y48B6A.3 14157604 14158266 1
CDS:Y48B6A.3 14159383 14159644 1
CDS:Y48B6A.3 14162419 14162812 1
CDS:Y48B6A.3 14164243 14164666 1
CDS:Y48B6A.3 14165311 14165916 1

1 Sequence

Length
2928

1 Sequence Ontology Term

Identifier Name Description
CDS  

1 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:Y48B6A.3.1 Y48B6A.3.1 3061   II: 14155768-14166030