WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:R06A4.8.1 Sequence Name  R06A4.8.1
Length (nt)  4757   Chromosome Location  II: 14350713-14358113
Chromosome . Primary Identifier  II Chromosome Location . Start  14350713
Chromosome Location . End  14358113 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
R06A4.8.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00011050 agl-1 R06A4.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:R06A4.8 R06A4.8 4404   II: 14350877-14351740

1 Chromosome

WormBase ID Organism Length (nt)
II Caenorhabditis elegans 15279421  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:R06A4.8.1 14350713 14358113 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

11 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon74500   1028   II: 14350713-14351740 Caenorhabditis elegans
Exon74501   589   II: 14352113-14352701 Caenorhabditis elegans
Exon74503   427   II: 14353304-14353730 Caenorhabditis elegans
Exon74505   550   II: 14353778-14354327 Caenorhabditis elegans
Exon74507   217   II: 14354373-14354589 Caenorhabditis elegans
Exon74509   353   II: 14355560-14355912 Caenorhabditis elegans
Exon74511   344   II: 14355965-14356308 Caenorhabditis elegans
Exon74513   178   II: 14356380-14356557 Caenorhabditis elegans
Exon74515   800   II: 14356603-14357402 Caenorhabditis elegans
Exon74517   120   II: 14357449-14357568 Caenorhabditis elegans
Exon74519   151   II: 14357963-14358113 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:R06A4.8.1 14350713 14358113 -1

1 Sequence

Length
4757

1 Sequence Ontology Term

Identifier Name Description
transcript