WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:Y50D7A.6.3 Sequence Name  Y50D7A.6.3
Length (nt)  2247   Chromosome Location  III: 209992-228838
Chromosome . Primary Identifier  III Chromosome Location . Start  209992
Chromosome Location . End  228838 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y50D7A.6.3

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00002230 klp-20 Y50D7A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y50D7A.6 Y50D7A.6 1941   III: 221419-221556

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.6.3 209992 228838 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

14 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77143   72   III: 209992-210063 Caenorhabditis elegans
Exon77147   141   III: 221416-221556 Caenorhabditis elegans
Exon77152   115   III: 221618-221732 Caenorhabditis elegans
Exon77156   145   III: 222063-222207 Caenorhabditis elegans
Exon77160   111   III: 222884-222994 Caenorhabditis elegans
Exon77164   80   III: 223056-223135 Caenorhabditis elegans
Exon77168   323   III: 223192-223514 Caenorhabditis elegans
Exon77173   172   III: 223904-224075 Caenorhabditis elegans
Exon77177   208   III: 224126-224333 Caenorhabditis elegans
Exon77181   343   III: 225338-225680 Caenorhabditis elegans
Exon77185   174   III: 226829-227002 Caenorhabditis elegans
Exon77189   92   III: 227390-227481 Caenorhabditis elegans
Exon77193   49   III: 227527-227575 Caenorhabditis elegans
Exon77196   222   III: 228617-228838 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y50D7A.6.3 209992 228838 1

1 Sequence

Length
2247

1 Sequence Ontology Term

Identifier Name Description
transcript