WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y55B1BR.2.1 Sequence Name  Y55B1BR.2.1
Length (nt)  2555   Chromosome Location  III: 434891-440142
Chromosome . Primary Identifier  III Chromosome Location . Start  434891
Chromosome Location . End  440142 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y55B1BR.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021912 affl-2 Y55B1BR.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y55B1BR.2 Y55B1BR.2 2223   III: 434911-434968

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y55B1BR.2.1 434891 440142 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon77509   78   III: 434891-434968 Caenorhabditis elegans
Exon77510   77   III: 435035-435111 Caenorhabditis elegans
Exon77511   274   III: 435870-436143 Caenorhabditis elegans
Exon77512   106   III: 436619-436724 Caenorhabditis elegans
Exon77513   701   III: 436826-437526 Caenorhabditis elegans
Exon77515   229   III: 438130-438358 Caenorhabditis elegans
Exon77516   130   III: 438409-438538 Caenorhabditis elegans
Exon77517   252   III: 438699-438950 Caenorhabditis elegans
Exon77518   137   III: 439258-439394 Caenorhabditis elegans
Exon77519   571   III: 439572-440142 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y55B1BR.2.1 434891 440142 1

1 Sequence

Length
2555

1 Sequence Ontology Term

Identifier Name Description
transcript