WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y39A3CL.2.1 Sequence Name  Y39A3CL.2.1
Length (nt)  4368   Chromosome Location  III: 1788333-1807147
Chromosome . Primary Identifier  III Chromosome Location . Start  1788333
Chromosome Location . End  1807147 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y39A3CL.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00006513 rimb-1 Y39A3CL.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y39A3CL.2 Y39A3CL.2 3831   III: 1789084-1789454

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3CL.2.1 1788333 1807147 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

20 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon80149   73   III: 1788333-1788405 Caenorhabditis elegans
Exon80151   418   III: 1789037-1789454 Caenorhabditis elegans
Exon80152   130   III: 1790789-1790918 Caenorhabditis elegans
Exon80154   73   III: 1791090-1791162 Caenorhabditis elegans
Exon80156   152   III: 1792719-1792870 Caenorhabditis elegans
Exon80158   115   III: 1793639-1793753 Caenorhabditis elegans
Exon80160   149   III: 1794120-1794268 Caenorhabditis elegans
Exon80163   124   III: 1795270-1795393 Caenorhabditis elegans
Exon80166   177   III: 1798660-1798836 Caenorhabditis elegans
Exon80168   273   III: 1799508-1799780 Caenorhabditis elegans
Exon80170   232   III: 1800254-1800485 Caenorhabditis elegans
Exon80172   88   III: 1801913-1802000 Caenorhabditis elegans
Exon80174   128   III: 1802056-1802183 Caenorhabditis elegans
Exon80176   370   III: 1803085-1803454 Caenorhabditis elegans
Exon80178   242   III: 1804154-1804395 Caenorhabditis elegans
Exon80180   733   III: 1804592-1805324 Caenorhabditis elegans
Exon80182   212   III: 1806019-1806230 Caenorhabditis elegans
Exon80184   187   III: 1806290-1806476 Caenorhabditis elegans
Exon80186   63   III: 1806523-1806585 Caenorhabditis elegans
Exon80188   429   III: 1806719-1807147 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y39A3CL.2.1 1788333 1807147 1

1 Sequence

Length
4368

1 Sequence Ontology Term

Identifier Name Description
transcript