WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y54F10BM.1.1 Sequence Name  Y54F10BM.1.1
Length (nt)  3527   Chromosome Location  III: 2331572-2343223
Chromosome . Primary Identifier  III Chromosome Location . Start  2331572
Chromosome Location . End  2343223 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y54F10BM.1.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021856 ppm-1.D Y54F10BM.1 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y54F10BM.1 Y54F10BM.1 2301   III: 2331581-2331661

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10BM.1.1 2331572 2343223 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon81037   90   III: 2331572-2331661 Caenorhabditis elegans
Exon81038   153   III: 2332003-2332155 Caenorhabditis elegans
Exon81039   97   III: 2332200-2332296 Caenorhabditis elegans
Exon81040   132   III: 2333086-2333217 Caenorhabditis elegans
Exon81041   309   III: 2334118-2334426 Caenorhabditis elegans
Exon81042   299   III: 2335284-2335582 Caenorhabditis elegans
Exon81043   390   III: 2336688-2337077 Caenorhabditis elegans
Exon81044   241   III: 2337934-2338174 Caenorhabditis elegans
Exon81045   320   III: 2340015-2340334 Caenorhabditis elegans
Exon81046   1496   III: 2341728-2343223 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y54F10BM.1.1 2331572 2343223 1

1 Sequence

Length
3527

1 Sequence Ontology Term

Identifier Name Description
transcript