WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:H38K22.5a Sequence Name  H38K22.5a
Length (nt)  1857   Chromosome Location  III: 4324799-4324843
Chromosome . Primary Identifier  III Chromosome Location . Start  4324799
Chromosome Location . End  4324843
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
H38K22.5a

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE18833 GLY-6, isoform a 71.1 618 Caenorhabditis elegans
 

Other

3 RNAi

WormBase ID
WBRNAi00049550
WBRNAi00005033
WBRNAi00027753

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:H38K22.5a 4324799 4324843 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00001631 gly-6 H38K22.5 Caenorhabditis elegans

11 Locations


Feature . Primary Identifier
Start End Strand
CDS:H38K22.5a 4324799 4324843 -1
CDS:H38K22.5a 4325039 4325161 -1
CDS:H38K22.5a 4325206 4325355 -1
CDS:H38K22.5a 4325535 4325642 -1
CDS:H38K22.5a 4325746 4325888 -1
CDS:H38K22.5a 4326071 4326254 -1
CDS:H38K22.5a 4326299 4326798 -1
CDS:H38K22.5a 4326982 4327125 -1
CDS:H38K22.5a 4327302 4327569 -1
CDS:H38K22.5a 4327703 4327768 -1
CDS:H38K22.5a 4327816 4327941 -1

1 Sequence

Length
1857

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:H38K22.5a.2 H38K22.5a.2 2698   III: 4324280-4331228
Transcript:H38K22.5a.1 H38K22.5a.1 2422   III: 4324280-4327987