WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:F25F2.2.1 Sequence Name  F25F2.2.1
Length (nt)  13422   Chromosome Location  III: 4520357-4536994
Chromosome . Primary Identifier  III Chromosome Location . Start  4520357
Chromosome Location . End  4536994 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F25F2.2.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000396 cdh-4 F25F2.2 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F25F2.2 F25F2.2 12987   III: 4520459-4520695

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F25F2.2.1 4520357 4536994 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

21 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon86012   339   III: 4520357-4520695 Caenorhabditis elegans
Exon86013   264   III: 4521013-4521276 Caenorhabditis elegans
Exon86014   252   III: 4521613-4521864 Caenorhabditis elegans
Exon86015   231   III: 4521922-4522152 Caenorhabditis elegans
Exon86016   777   III: 4522256-4523032 Caenorhabditis elegans
Exon86017   114   III: 4523328-4523441 Caenorhabditis elegans
Exon86018   186   III: 4523829-4524014 Caenorhabditis elegans
Exon86019   105   III: 4524060-4524164 Caenorhabditis elegans
Exon86022   805   III: 4525310-4526114 Caenorhabditis elegans
Exon86023   553   III: 4526161-4526713 Caenorhabditis elegans
Exon86024   912   III: 4526763-4527674 Caenorhabditis elegans
Exon86025   828   III: 4527729-4528556 Caenorhabditis elegans
Exon86026   1876   III: 4528615-4530490 Caenorhabditis elegans
Exon86027   20   III: 4530492-4530511 Caenorhabditis elegans
Exon86028   69   III: 4530513-4530581 Caenorhabditis elegans
Exon86029   382   III: 4530643-4531024 Caenorhabditis elegans
Exon86030   1678   III: 4531072-4532749 Caenorhabditis elegans
Exon86031   2302   III: 4532822-4535123 Caenorhabditis elegans
Exon86032   267   III: 4535171-4535437 Caenorhabditis elegans
Exon86033   840   III: 4535486-4536325 Caenorhabditis elegans
Exon86034   622   III: 4536373-4536994 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F25F2.2.1 4520357 4536994 1

1 Sequence

Length
13422

1 Sequence Ontology Term

Identifier Name Description
transcript