WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

CDS :

WormMine ID  CDS:M88.5e Sequence Name  M88.5e
Length (nt)  1944   Chromosome Location  III: 4556251-4556511
Chromosome . Primary Identifier  III Chromosome Location . Start  4556251
Chromosome Location . End  4556511
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
M88.5e

Proteins

1 Protein

WormBase ID Name Molecular Weight (kDa) Length Organism
CE54377 IMPH-1, isoform e 72.2 647 Caenorhabditis elegans
 

Other

9 RNAi

WormBase ID
WBRNAi00051074
WBRNAi00051075
WBRNAi00017283
WBRNAi00005966
WBRNAi00034501
WBRNAi00070778
WBRNAi00002132
WBRNAi00070779
WBRNAi00084848

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
CDS:M88.5e 4556251 4556511 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans CDS sequence (Fasta)  

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00010908 imph-1 M88.5 Caenorhabditis elegans

10 Locations


Feature . Primary Identifier
Start End Strand
CDS:M88.5e 4556251 4556511 1
CDS:M88.5e 4556847 4557008 1
CDS:M88.5e 4557101 4557363 1
CDS:M88.5e 4557415 4557537 1
CDS:M88.5e 4557578 4557752 1
CDS:M88.5e 4557797 4557901 1
CDS:M88.5e 4557980 4558291 1
CDS:M88.5e 4558612 4558915 1
CDS:M88.5e 4559400 4559582 1
CDS:M88.5e 4559631 4559686 1

1 Sequence

Length
1944

1 Sequence Ontology Term

Identifier Name Description
CDS  

2 Transcripts

WormMine ID Sequence Name Length (nt) Chromosome Location
Transcript:M88.5e.1 M88.5e.1 3301   III: 4553617-4560431
Transcript:M88.5e.2 M88.5e.2 3276   III: 4553630-4560431