WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

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mRNA :

WormMine ID  Transcript:F52C9.8c.1 Sequence Name  F52C9.8c.1
Length (nt)  2391   Chromosome Location  III: 5311246-5321735
Chromosome . Primary Identifier  III Chromosome Location . Start  5311246
Chromosome Location . End  5321735 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
F52C9.8c.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00004095 pqe-1 F52C9.8 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:F52C9.8c F52C9.8c 2013   III: 5311260-5311329

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.8c.1 5311246 5321735 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon88399   84   III: 5311246-5311329 Caenorhabditis elegans
Exon88406   77   III: 5311771-5311847 Caenorhabditis elegans
Exon88413   54   III: 5311952-5312005 Caenorhabditis elegans
Exon88420   84   III: 5312054-5312137 Caenorhabditis elegans
Exon88438   57   III: 5315713-5315769 Caenorhabditis elegans
Exon88444   231   III: 5315815-5316045 Caenorhabditis elegans
Exon88449   177   III: 5316095-5316271 Caenorhabditis elegans
Exon88456   214   III: 5316699-5316912 Caenorhabditis elegans
Exon88464   731   III: 5319927-5320657 Caenorhabditis elegans
Exon88471   682   III: 5321054-5321735 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:F52C9.8c.1 5311246 5321735 1

1 Sequence

Length
2391

1 Sequence Ontology Term

Identifier Name Description
transcript