WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:C05D2.4a.1 Sequence Name  C05D2.4a.1
Length (nt)  1615   Chromosome Location  III: 5612274-5614658
Chromosome . Primary Identifier  III Chromosome Location . Start  5612274
Chromosome Location . End  5614658 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
C05D2.4a.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00000239 bas-1 C05D2.4 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:C05D2.4a C05D2.4a 1545   III: 5612289-5612411

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:C05D2.4a.1 5612274 5614658 1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

7 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon89321   138   III: 5612274-5612411 Caenorhabditis elegans
Exon89323   468   III: 5612551-5613018 Caenorhabditis elegans
Exon89326   210   III: 5613384-5613593 Caenorhabditis elegans
Exon89328   354   III: 5613640-5613993 Caenorhabditis elegans
Exon89330   99   III: 5614040-5614138 Caenorhabditis elegans
Exon89332   105   III: 5614208-5614312 Caenorhabditis elegans
Exon89334   241   III: 5614418-5614658 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:C05D2.4a.1 5612274 5614658 1

1 Sequence

Length
1615

1 Sequence Ontology Term

Identifier Name Description
transcript