WormMine

WS294

Intermine data mining platform for C. elegans and related nematodes

mRNA :

WormMine ID  Transcript:Y42G9A.6f.1 Sequence Name  Y42G9A.6f.1
Length (nt)  2077   Chromosome Location  III: 6141957-6149446
Chromosome . Primary Identifier  III Chromosome Location . Start  6141957
Chromosome Location . End  6149446 Method  Coding_transcript
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1 Organism

Name Taxon Id
Caenorhabditis elegans 6239

1 Synonyms

Value
Y42G9A.6f.1

Genomics

1 Gene

WormBase Gene ID Gene Name Sequence Name Organism
WBGene00021535 wht-7 Y42G9A.6 Caenorhabditis elegans
 

Other

1 CDSs

WormMine ID Sequence Name Length (nt) Chromosome Location
CDS:Y42G9A.6f Y42G9A.6f 1911   III: 6142123-6142295

1 Chromosome

WormBase ID Organism Length (nt)
III Caenorhabditis elegans 13783801  

1 Chromosome Location


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.6f.1 6141957 6149446 -1

3 Data Sets

Name URL
WormBaseAcedbConverter  
C. elegans genomic annotations (GFF3 Gene)  
WormBase C. elegans transcript sequence (Fasta)  

10 Exons

WormBase ID Name Sequence Name Length (nt) Chromosome Location Organism
Exon91375   339   III: 6141957-6142295 Caenorhabditis elegans
Exon91388   439   III: 6142340-6142778 Caenorhabditis elegans
Exon91396   302   III: 6142828-6143129 Caenorhabditis elegans
Exon91404   257   III: 6143177-6143433 Caenorhabditis elegans
Exon91412   170   III: 6143807-6143976 Caenorhabditis elegans
Exon91420   96   III: 6144026-6144121 Caenorhabditis elegans
Exon91429   183   III: 6144169-6144351 Caenorhabditis elegans
Exon91446   128   III: 6149067-6149194 Caenorhabditis elegans
Exon91452   109   III: 6149238-6149346 Caenorhabditis elegans
Exon91454   54   III: 6149393-6149446 Caenorhabditis elegans

1 Locations


Feature . Primary Identifier
Start End Strand
Transcript:Y42G9A.6f.1 6141957 6149446 -1

1 Sequence

Length
2077

1 Sequence Ontology Term

Identifier Name Description
transcript